PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3402230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 314aa    MW: 36380.5 Da    PI: 9.507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3402230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52221541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdeel+++yL+ kv + ++++++v ++evd++++ePw+Lp  +k +e+ewy Fs rdkky+tg r+nrat +gyWkatgkdkev+
  Lj1g3v3402230.1  22 LPPGFRFHPTDEELITFYLASKVFNGTFTTTNVkFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDKKYPTGLRTNRATGAGYWKATGKDKEVY 115
                      79*************************9998989***************8888899************************************** PP

              NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s+    ++ l g+kktLvfykgrap+gekt+Wvmheyrl
  Lj1g3v3402230.1 116 SAssngEKLLLGMKKTLVFYKGRAPRGEKTRWVMHEYRL 154
                      *877544455***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6017181IPR003441NAC domain
PROSITE profilePS5100556.77622181IPR003441NAC domain
PfamPF023651.4E-2623154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MLAMEDVLCE LSDHEKRNEQ GLPPGFRFHP TDEELITFYL ASKVFNGTFT TTNVKFAEVD  60
LNRCEPWELP DVAKMGEREW YLFSLRDKKY PTGLRTNRAT GAGYWKATGK DKEVYSASSN  120
GEKLLLGMKK TLVFYKGRAP RGEKTRWVMH EYRLDGHFSI SHHHTTLISK EEWVICRIFH  180
KSGEKKVQGH LNADSPSPTK NTTTLPPPLS LAKTPTNSLT LCQSKTSSHH HSFQNDSDHL  240
FPFQPACFPY TRXXXXXXXX XXXXXXXXXX XEITIHLLKY SSRLSYLNRS RSNSQLQNEP  300
KWRLQQYSMI NSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48131846171Stress-induced transcription factor NAC1
3swp_D1e-482218120168NAC domain-containing protein 19
3swp_C1e-482218120168NAC domain-containing protein 19
3swp_B1e-482218120168NAC domain-containing protein 19
3swp_A1e-482218120168NAC domain-containing protein 19
3swm_D1e-482218120168NAC domain-containing protein 19
3swm_C1e-482218120168NAC domain-containing protein 19
3swm_B1e-482218120168NAC domain-containing protein 19
3swm_A1e-482218120168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135979.11e-126hypothetical protein PHAVU_009G008000g
SwissprotQ9S8517e-91NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLV7ATN91e-126V7ATN9_PHAVU; Uncharacterized protein
STRINGGLYMA04G01651.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-91NAC family protein